How to better recycle nutrients in aquaculture: Indicators and application to three integrated systems

It is possible to reduce nutrient losses in aquaculture farming systems by promoting their reuse: this is the principle of circularity (a concept derived from the circular economy). This not only reduces the negative environmental impact of fish farms, but also improves their production performance and autonomy. This study presents the main principles, key indicators and concrete results of such a practice, comparing the performance of three integrated aquaculture systems.

Published on 28 August 2025

© Joël Aubin

Faced with growing environmental challenges, nutrient circularity (a concept derived from the circular economy) is emerging as an essential lever for reducing losses and dependence on synthetic inputs (nutrients, fertilisers, etc.) in agriculture and aquaculture.

Researchers at Wageningen University and INRAE's SAS joint research unit have set themselves the goal of proposing a set of quantitative indicators to assess the level of nutrient circularity in different aquaculture systems. A review of the literature has made it possible to:

1. Define six key performance criteria for aquaculture systems that depend on the level of nutrient circularity: productivity, efficiency, self-sufficiency, recycling, ecosystem regeneration, diversity and complementarity.

2. Propose 21 simple indicators to quantify these criteria (such as yield, nutrient losses, or the use of co-products in feed).

These indicators were then used to measure the level of nutrient circularity in three experimental integrated aquaculture systems: an aquaponics system, a biofloc system, and a polyculture pond system, each compared to its monoculture equivalent.

The aquaponics system (tilapia + tomatoes) improves productivity and efficiency compared to the recirculating system without plants, but shows a low capacity for nutrient recycling by plants.

The biofloc system (tilapia + microorganisms), which uses a microbial community to convert nitrogenous waste into edible biomass for fish, outperforms the clear water system in terms of productivity, efficiency, recycling (60% bioremediation* of nitrogen) and self-sufficiency, although it only produces a single commercial species.

• The polyculture pond system (carp + rohu, a fish in demand in Asia) doubles yields compared to monoculture, with a marked improvement in efficiency and a slight increase in recycling and nutrient self-sufficiency, thanks to the dietary complementarity of the species.

Production System

Advantages

Limitations

Aquaponics / Recirculating systemHigh overall productivity (fish + plants), reduced nitrogen lossesLimited nutrient uptake by plants, low self-sufficiency
Biofloc / Clear-water systemEfficient internal nutrient cycling, minimal losses, higher self-sufficiencyHigher energy demand, greater management complexity
Polyculture / Monoculture in pondImproved feed utilization efficiency, good production yieldsModerate nutrient cycling, continued reliance on external fertilizers

All integrated systems outperformed conventional systems on at least one important criterion. There are therefore different paths to circularity. However, there is often a lack of data to calculate certain indicators, and the authors of this study call for greater transparency in aquaculture practices (feed composition, outputs, energy expenditure, etc.). This study does not recommend a single model, but shows that the principles of circularity must be adapted to each context, taking into account available resources, local constraints and economic opportunities.

This study proposes a simple toolkit for measuring and improving nutrient utilisation rates in aquaculture. The results show that integrated aquaculture is promising, provided that the most complementary species in terms of the food web are selected and that farming techniques are mastered, including close monitoring of farming parameters. The prospects are to extend this assessment to other types of systems, such as integrated multi-trophic aquaculture (IMTA), and to integrate these indicators into sustainability assessment methods, including social, economic and environmental aspects.

* Bioremediation involves using micro-organisms to break down or metabolise organic contaminants present in soil, water, sludge and solids.

 

References: Chary, K.; Jaeger, C.; Jansen, H.M.; Harchaoui, S.; Aubin, J., 2025. Evaluating nutrient circularity in integrated aquaculture systems: criteria and indicators. Journal of Cleaner Production, 504: 13. - https://doi.org/10.1016/j.jclepro.2025.145414

Scientific contact

Joël Aubin

Soils, Agricultural and hydrological systems, Spatialization (SAS)

Centre

Division

Learn more

Agroecology

Using genetics to support sustainable aquaculture: results from 20 years of breeding rainbow trout

PRESS RELEASE - The world’s oceans can no longer sustain the ever-rising demand for fish. Aquaculture offers an alternative approach – if production is sustainable and high quality. INRAE, the Aqualande group and its selective breeding company Les Sources de l’Avance, and the French Poultry and Aquaculture Breeders Technical Center (SYSAAF) reviewed data from 20 years of a rainbow trout breeding programme conducted by the company. They compared the growth and nutrition needs of trout from this programme with those of an unselected trout population.

12 October 2022

Food, Global Health

Lucie Marandel, an adept of basic research

How does the diet of trout affect their metabolism? That is what Lucie Marandel, a research scientist in the Nutrition, Metabolism, Aquaculture (NuMeA) joint research unit, is trying to understand via nutrient-induced epigenetic regulation. Potentially important basic research recognised by INRAE’s 2021 Promising Researcher Award.

24 November 2021

Biodiversity

Tanzania: how marine protected areas are transforming the local economy over the long term

Confronted with the alarming collapse of marine biodiversity, multiuse marine protected areas (MPAs) seek to reconcile nature conservation with economic development. Although these areas authorise certain human activities, they sometimes impose strong regulations to reduce the impact of fishing, aquaculture, shipping and other activities on marine ecosystems. The real effects of MPAs, both on the environment and on local communities, remain debated and under-studied. A recent study carried out in Tanzania sheds light on the long-term socio-economic effects of MPAs.

04 October 2024